PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186189.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 462aa MW: 52053.3 Da PI: 6.6288

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.7e-30	115	200	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_019186189.1 115 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 200 8*********************************998***************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MEDQYGMADL RNFINNRPLY TSTPHPQPPE FLSPHHRNLA PPPPPSHHPY EMVMPPVPPH 60 PRGFHHDFLP DCSTNNAATT TASVITGGGA SSAAFSGLEM DAAGGGLGCD GGNGRWPRQE 120 TLTLLEIRSR LDPKFKEANQ KGPLWDEVSR IMCEEHGYQR SGKKCREKFE NLYKYYKKTK 180 EGKAGRQDGK HYRFFRQLEA LYGEPSNNSG SVSETHHAGT GSFPYNNAAV GGNNNNTTTQ 240 DAAAFHHHHH QDSKVSDSLS LSNSSDYETT SSEDDESDLQ GGGGGMASKK RKGKGRWKAK 300 IKDFIDGQMR KLMEKQEAWL DKIMKTIENK EEERMLREDE WRKQEASRME REQKFWANER 360 AWIEARDSAL MEALHKVTGN ECNKKRKDDE ENNNIGSCYS FQNNINGGSY CPEQPQPNDN 420 HHHPINPAIN DSCFRLLMGD NADNLWENYG LKLSNGGGDD EK

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MEDQYGMADL RNFINNRPLY TSTPHPQPPE FLSPHHRNLA PPPPPSHHPY EMVMPPVPPH  60
PRGFHHDFLP DCSTNNAATT TASVITGGGA SSAAFSGLEM DAAGGGLGCD GGNGRWPRQE  120
TLTLLEIRSR LDPKFKEANQ KGPLWDEVSR IMCEEHGYQR SGKKCREKFE NLYKYYKKTK  180
EGKAGRQDGK HYRFFRQLEA LYGEPSNNSG SVSETHHAGT GSFPYNNAAV GGNNNNTTTQ  240
DAAAFHHHHH QDSKVSDSLS LSNSSDYETT SSEDDESDLQ GGGGGMASKK RKGKGRWKAK  300
IKDFIDGQMR KLMEKQEAWL DKIMKTIENK EEERMLREDE WRKQEASRME REQKFWANER  360
AWIEARDSAL MEALHKVTGN ECNKKRKDDE ENNNIGSCYS FQNNINGGSY CPEQPQPNDN  420
HHHPINPAIN DSCFRLLMGD NADNLWENYG LKLSNGGGDD EK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	315	KKRKGKGRWKAKIKDFIDGQMRKLMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-53	Trihelix family protein