PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186241.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 257aa MW: 29023 Da PI: 6.6783

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.8	2.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien rqvtfskRr g+lKKA+ELS+LCdaevaviifsst+kl+eyss XP_019186241.1 9 KLIENVNSRQVTFSKRRSGLLKKAQELSILCDAEVAVIIFSSTDKLFEYSS 59 569**********************************************96 PP
2	K-box	65.1	2.6e-22	79	172	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + e+k + ++e++ L++ei++L+++q +llG+dL+ + l+eL+qLe++L+ +l i+ +K++llleq+e+++k+e+++ en++Lr+++ee XP_019186241.1 79 PKIVEKKPKVEHKEVEVLNNEISELKSKQLQLLGKDLTGMGLNELRQLEHKLDGALLAIKGRKEQLLLEQLENSRKQEERALVENENLRRQIEE 172 456677888899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MGRGKIDIKL IENVNSRQVT FSKRRSGLLK KAQELSILCD AEVAVIIFSS TDKLFEYSST 60 SMKHTLSRYN KCLDSTETPK IVEKKPKVEH KEVEVLNNEI SELKSKQLQL LGKDLTGMGL 120 NELRQLEHKL DGALLAIKGR KEQLLLEQLE NSRKQEERAL VENENLRRQI EELRGLVPSN 180 VSMPMPTPYL EYYPVLKNCS SGKDGAESLN TGCDDDLDNE VSDTTLQLGP PTGSCRKRKT 240 PDQETHSSNS ENHLELK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	2e-66	MIKC_MADS family protein