PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186301.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 302aa    MW: 33763.2 Da    PI: 6.8029
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-102873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ da +++ ++   +W+ +a++++ g+t +++   ++ 
   XP_019186301.1 28 KWTAEENKRFEDALALFDKDtpdRWHNVAAMIP-GKTVNDVMRQYRE 73
                     7********************************.*******999986 PP
2Myb_DNA-binding44.63.4e-14142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
   XP_019186301.1 142 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 186
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MSQEMGILSS ETYLSDSNWL FDETKAAKWT AEENKRFEDA LALFDKDTPD RWHNVAAMIP  60
GKTVNDVMRQ YRELVADVSD IEAGLIPIPA GYATTHSFTL EWVDSHGHGG AAYDAYTQFY  120
APPGKRTNSG RSSDHERKKG VPWTEEEHRQ FLLGLKKYGK GDWRNISRNF VTSRTPTQVA  180
SHAQKYFIRQ LSGGKDKRRS SIHDITTVNL SETTKSPSPD NNNSCSSDKP AAQLITTPPL  240
SNNHGGVSIT FDSQYGSLIT AATATFQGTS SYGLNLHEHN NMQYNNNNNI NLHGLQFQMQ  300
PE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-105MYB family protein