PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186420.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 745aa MW: 84911.4 Da PI: 6.9841

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	70	156	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ + + + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019186420.1 70 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 156 7*************************************998877..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MDDAVDQRDE VLDQRDEAGD ELHTVPVSED VVDSPSSDPI ELDIDGSSSN PVDEDLVGVV 60 VSNGVEAYEL YNNYAYRVGF SVRKGNQRCK VYSKTVQMKM FMCSKAGFKV KANAGVRAYS 120 KIDTRSGCGA CVQFDVGEDG LWTVTKHVKV HNHELCAVDK SHLLRSHRNV GDNQLLYLKD 180 LKKSGVAMAD GIRFLKHQAG GSPLVGFTNR DAYNSIASDT SKRLDGTDSN SLIEIFRKRQ 240 STESDFFFDF EVDCDSRLCS FFWRDGRMRQ DYELFGDLLV HDTTYRTNKY DMICGPFVGM 300 NHHCMNVMFG CGFLMNERIE SFVWLFRAFL RSMNGKCPQT IMTDQCASMA AAICQVFPTS 360 RHRLCIWHIG ENSKKHIKAL RNNKDFLDMF NCVLKYTETE FWNCEYTVLE LWTYSISCLN 420 MLVTDYKCHK NSWIQKLYDC REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL 480 CDFYSSFVSV TSEWRSKENG EDFRCTQGVP NMMMEHVKLL LHAREVYTIE IYFLFEEQFM 540 KGNACHQEMV LNEGCQFKYH VWRPDIDIIR HEVSFKLSTL DISCSCKLIS ELGILYCHCL 600 RILHIHCASS IPNKYIMKRW TKKVADGRDV NTGSMFCRAG VPPSIWVVEI CRKFQRLISS 660 SQDNSVTRQF CDEAVEEAKK KKYSAARGRR SAANKVASST KGAVQSLVLE SLSEIAGDGY 720 LVHPSSGSSE FCQYSNDVDD NAVVD

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MDDAVDQRDE VLDQRDEAGD ELHTVPVSED VVDSPSSDPI ELDIDGSSSN PVDEDLVGVV  60
VSNGVEAYEL YNNYAYRVGF SVRKGNQRCK VYSKTVQMKM FMCSKAGFKV KANAGVRAYS  120
KIDTRSGCGA CVQFDVGEDG LWTVTKHVKV HNHELCAVDK SHLLRSHRNV GDNQLLYLKD  180
LKKSGVAMAD GIRFLKHQAG GSPLVGFTNR DAYNSIASDT SKRLDGTDSN SLIEIFRKRQ  240
STESDFFFDF EVDCDSRLCS FFWRDGRMRQ DYELFGDLLV HDTTYRTNKY DMICGPFVGM  300
NHHCMNVMFG CGFLMNERIE SFVWLFRAFL RSMNGKCPQT IMTDQCASMA AAICQVFPTS  360
RHRLCIWHIG ENSKKHIKAL RNNKDFLDMF NCVLKYTETE FWNCEYTVLE LWTYSISCLN  420
MLVTDYKCHK NSWIQKLYDC REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL  480
CDFYSSFVSV TSEWRSKENG EDFRCTQGVP NMMMEHVKLL LHAREVYTIE IYFLFEEQFM  540
KGNACHQEMV LNEGCQFKYH VWRPDIDIIR HEVSFKLSTL DISCSCKLIS ELGILYCHCL  600
RILHIHCASS IPNKYIMKRW TKKVADGRDV NTGSMFCRAG VPPSIWVVEI CRKFQRLISS  660
SQDNSVTRQF CDEAVEEAKK KKYSAARGRR SAANKVASST KGAVQSLVLE SLSEIAGDGY  720
LVHPSSGSSE FCQYSNDVDD NAVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-80	FAR1 family protein