PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186439.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 219aa MW: 23588.3 Da PI: 7.612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_019186439.1 138 HECSYCGAEFSSGQALGGHMRRH 160 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MTPPHSSATS EPIPAAPTPE DEDMARCLMI LSQGGGVSRH PPAIPKSPLY KEEESGGGSK 60 FCSKKYIETT TVGGGGGTSH TKEKPPLTTV ETAAVKRPLS LYDEEDINPY PFNKTPKISP 120 PFSSLHFYDS AKSSPRIHEC SYCGAEFSSG QALGGHMRRH RNSTAAAAAS QLSPSSSSFE 180 KRVLQKEENN GKGLNLDLNL LPAGEDNQDH RRAREPIVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-15	C2H2 family protein