PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186455.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 192aa    MW: 20282 Da    PI: 5.2247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-053052123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C k+F++k+ L  H++ H
  XP_019186455.1 30 FGCKYCEKRFRNKHALGGHQNAH 52
                    56******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MAAASGQSRE EDRAAAAAAA VAVPEAAAGF GCKYCEKRFR NKHALGGHQN AHRMERAMDW  60
TVKRRRVGFM DYNPFYPFAA FPPLPVGGAG GEVNYLYQAA DAMPPYFLPG LPEIPARPPL  120
FAYPFPPAVP ETQVLSGPAM TASGDNTSPV GSVPADSPVT NLLGSIAAIN SIPGNTPEVL  180
IEDGEVDLNL KL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-08C2H2 family protein