PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186463.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 726aa MW: 84715.4 Da PI: 8.6335

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.9	1.3e-21	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAke+GF+vr +++++ r g++ + + Cs+eg+++e+k+ +ek+rr+r+++r+gCka+++++k ++g ++v+ ++l H+H l+ XP_019186463.1 35 EFYEEYAKEAGFDVRHGTKRRN-RFGQVSIKYMLCSREGYKAERKEPnnssKEKQRRRRVSNRIGCKARMVITKCDEGGYKVHAIQLRHTHCLC 127 6***************9999.66669999999****999888888999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MEIHKDGSKY WIPPTTKEKT PFEGQRFETV ENGIEFYEEY AKEAGFDVRH GTKRRNRFGQ 60 VSIKYMLCSR EGYKAERKEP NNSSKEKQRR RRVSNRIGCK ARMVITKCDE GGYKVHAIQL 120 RHTHCLCSDA AKPFLKINRQ LDIGHKTFLT HCAKANIGPT KAFRLFKEMV GTFTDVGATC 180 IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK EDNPDFYFDF DIDEEAQLTR LFWADAECRR 240 NYAYYGDVMS FDATYNTNRY KLVFVPFTGV DNHKRCITFG AGLISKEDVE SYEWLLMKFK 300 TAMEYTPRCA TTDQDPALKI VVPQIMPTTR HRFCMWHIMA KVGEKVGVTL WHTTDFKKEL 360 NNTVWDDTLT IDEFERKWTT LMKDYNLEAH RWFAQLYEAR ASWIPAYFND ILMGGLLRTT 420 SRSESENHYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQSK LNAENEGSYP ETKTPLSIEK 480 HAARVYTVNI FYEFQKEIWD SSFKCHITDK NNLGDTWTYQ VEETGGKIYE VTEIPSTEQI 540 ECACKHFNRV GILCKHVIQV MKTRGYETIP QKYITPRWTR DACAQPLYDV PWAKRAKIHK 600 TTETTKVANQ LWNEFYNCMG LVNGWPDKME KMLETLQQLK KDLENERQQT QEHPPNECVF 660 ERLIGSSRPS DIQIKPPQVA KNKGSGKRLK SNREKAATNN QKKKARTCNI CDLPGHNSRT 720 CPNKLA

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MEIHKDGSKY WIPPTTKEKT PFEGQRFETV ENGIEFYEEY AKEAGFDVRH GTKRRNRFGQ  60
VSIKYMLCSR EGYKAERKEP NNSSKEKQRR RRVSNRIGCK ARMVITKCDE GGYKVHAIQL  120
RHTHCLCSDA AKPFLKINRQ LDIGHKTFLT HCAKANIGPT KAFRLFKEMV GTFTDVGATC  180
IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK EDNPDFYFDF DIDEEAQLTR LFWADAECRR  240
NYAYYGDVMS FDATYNTNRY KLVFVPFTGV DNHKRCITFG AGLISKEDVE SYEWLLMKFK  300
TAMEYTPRCA TTDQDPALKI VVPQIMPTTR HRFCMWHIMA KVGEKVGVTL WHTTDFKKEL  360
NNTVWDDTLT IDEFERKWTT LMKDYNLEAH RWFAQLYEAR ASWIPAYFND ILMGGLLRTT  420
SRSESENHYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQSK LNAENEGSYP ETKTPLSIEK  480
HAARVYTVNI FYEFQKEIWD SSFKCHITDK NNLGDTWTYQ VEETGGKIYE VTEIPSTEQI  540
ECACKHFNRV GILCKHVIQV MKTRGYETIP QKYITPRWTR DACAQPLYDV PWAKRAKIHK  600
TTETTKVANQ LWNEFYNCMG LVNGWPDKME KMLETLQQLK KDLENERQQT QEHPPNECVF  660
ERLIGSSRPS DIQIKPPQVA KNKGSGKRLK SNREKAATNN QKKKARTCNI CDLPGHNSRT  720
CPNKLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-94	FAR1 family protein