PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186469.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 256aa    MW: 29177.3 Da    PI: 8.6076
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS61.71.5e-194145131266
            GRAS 131 aLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                     +L+ Rp ++pp +R+T++++++ +      +       + L  +A+++++++++n l    l++l+ ++L+ +p+E l+++ +++lh+l ++s +
  XP_019186469.1   4 ELTRRPgGPPPLVRLTVIDNHHFTstpflVSPPGYDFFKYLLGYAKRININLQINKLENFPLQNLNSQTLNSSPDEILIISAQFRLHNLSHHSPD 98 
                     68999955667********96555888887777778889999**************8777*****************************966665 PP

            GRAS 220 leserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysa 266
                      +s   e+L+ +++l Pk vv++e++ad++ +   +F++++++ +ey ++
  XP_019186469.1  99 DRS---EFLRGLRNLGPKGVVLSENNADCSCShcgDFANGLSRRVEYLWM 145
                     555...********************998443355999999999999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MEVELTRRPG GPPPLVRLTV IDNHHFTSTP FLVSPPGYDF FKYLLGYAKR ININLQINKL  60
ENFPLQNLNS QTLNSSPDEI LIISAQFRLH NLSHHSPDDR SEFLRGLRNL GPKGVVLSEN  120
NADCSCSHCG DFANGLSRRV EYLWMEGEAV KALTNVGEMN ECKEKWCQRM MSVGFVGQAF  180
REDAIDTARA WLPECGSMEE KDADGLVRRK ILSKKKIWLV SHGDGRRRSG AVDASLVRHR  240
QHRRVIQEIF ELHSRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-47GRAS family protein