PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186488.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 256aa MW: 28437.2 Da PI: 9.6009

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.8e-16	8	53	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eE +ll+++v+q+G ++W +I+ ++ gR++ +c+ rw + XP_019186488.1 8 KGPWSKEENDLLKKLVEQHGARNWLLISDSIP-GRSAMSCRTRWCNQ 53 79****************************.*********985 PP
2	Myb_DNA-binding	56	9e-18	63	104	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T+eEde +v+a+++ G++ W+tIar+++ gRt++ +k++w++ XP_019186488.1 63 FTPEEDEVIVKAHAEVGNK-WATIARMLN-GRTDNAIKNHWNST 104 8****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MADSGRVKGP WSKEENDLLK KLVEQHGARN WLLISDSIPG RSAMSCRTRW CNQLSPEVEH 60 RLFTPEEDEV IVKAHAEVGN KWATIARMLN GRTDNAIKNH WNSTLKRKYN EGGEPRPWRI 120 LKRADSADVT VTAAPPPPPV LRVSRDSSSE SDISYSAAAK SLRMALPLRA VEKENDPSTV 180 LTLSLPAPGA NDGVSSFQRD QPSYRRGDST EAAPAPAPAP VKSKSTLTLS PELLSLMQEM 240 IRKEVENYYA EVKRIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-57	MYB family protein