PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186551.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 408aa MW: 46189.1 Da PI: 5.3428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.2e-18	118	164	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd l+++v+q+G + W+ +a++m gR +kqc++rwq++l XP_019186551.1 118 RGQWSEEEDRNLIRLVNQYGVKKWAQVAEMMA-GRAGKQCRERWQNHL 164 89****************************.***********97 PP
2	Myb_DNA-binding	56	9.2e-18	178	220	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ l++++++lG++ W+ Ia++++ gRt++++k++w+ XP_019186551.1 178 KDSWSEEEERVLIEVHEKLGNR-WAEIAKRIP-GRTENSVKNHWN 220 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MEDSDGGFGY NTNFRSGPPR LPLDRFLWAH HSQQQVPNVD DEMKNRSETI MFFPGNRVGE 60 HSSSHAVASW PNPQEVIRFY EFIHGVDRSP PVGNNVNESP PGRQVKYSRS STSTLLIRGQ 120 WSEEEDRNLI RLVNQYGVKK WAQVAEMMAG RAGKQCRERW QNHLRPDIKL INIMELQKDS 180 WSEEEERVLI EVHEKLGNRW AEIAKRIPGR TENSVKNHWN ATKRRQNSTR RSKKVQENKS 240 TVLQDYIKAK YPPKLDYSGA GVSESRPSIQ TDQILSPSAG EDDDDDDSSS LLMQEAYHDE 300 DMSFMESLFG NDSTDPYPTI MAADPGNLNK HNEEPIPPPP DRYLAYLLEG ATTSPASSSM 360 EFTMNQLGSS YCYPSLSSGT KAAKDIDLME LIFPSPSQSS QGSNNNTN

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MEDSDGGFGY NTNFRSGPPR LPLDRFLWAH HSQQQVPNVD DEMKNRSETI MFFPGNRVGE  60
HSSSHAVASW PNPQEVIRFY EFIHGVDRSP PVGNNVNESP PGRQVKYSRS STSTLLIRGQ  120
WSEEEDRNLI RLVNQYGVKK WAQVAEMMAG RAGKQCRERW QNHLRPDIKL INIMELQKDS  180
WSEEEERVLI EVHEKLGNRW AEIAKRIPGR TENSVKNHWN ATKRRQNSTR RSKKVQENKS  240
TVLQDYIKAK YPPKLDYSGA GVSESRPSIQ TDQILSPSAG EDDDDDDSSS LLMQEAYHDE  300
DMSFMESLFG NDSTDPYPTI MAADPGNLNK HNEEPIPPPP DRYLAYLLEG ATTSPASSSM  360
EFTMNQLGSS YCYPSLSSGT KAAKDIDLME LIFPSPSQSS QGSNNNTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	7e-50	MYB family protein