PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186570.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 172aa    MW: 20022.4 Da    PI: 10.2971
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.6e-121047340
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    i n  +r+ t+ kR+n +lKK +EL +LC++++a+i++
  XP_019186570.1 10 IVNGFKRKATYKKRKNEMLKKLNELTILCGVDAAIIMY 47
                    668889******************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MARRLRLAYI VNGFKRKATY KKRKNEMLKK LNELTILCGV DAAIIMYISF ESGPVIWPSA  60
GEVQQRITRF MNLPHVEQTQ RMMSPESFVE ERIQKLNTRL LKVKKDNRER EMDALMHKII  120
TGERTINSLR VIDQNDLDWV LTTNLVKIDN MAEEIMRHSS TIASSDFAPA QL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-30M-type_MADS family protein