PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019186647.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26036.3 Da    PI: 7.5007
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019186647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2069121456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++++qle Le+ F+++ +++ +++++LAk+lgL+ rq+ vWFqNrRa++k
  XP_019186647.1  69 KKRLSNDQLESLENSFQEEIKLDPDRKQRLAKELGLQPRQIAVWFQNRRARWK 121
                     55699***********************************************9 PP
2HD-ZIP_I/II120.11.2e-3868158292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+ ++a+++e+++L++ev +Lr+ lk
  XP_019186647.1  68 KKKRLSNDQLESLENSFQEEIKLDPDRKQRLAKELGLQPRQIAVWFQNRRARWKTKQLERLYDSLKHDFEAVTREKQKLQEEVLTLRSILK 158
                     9**************************************************************************************8877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MDWNGNFTIP FVPRQPPSSS QDVSFNFLCG YNYNHYPGGI EMKNAMQSHN AVVPPLEKHG  60
SFGNPMDKKK RLSNDQLESL ENSFQEEIKL DPDRKQRLAK ELGLQPRQIA VWFQNRRARW  120
KTKQLERLYD SLKHDFEAVT REKQKLQEEV LTLRSILKDQ ATKKQVSTGY TEMSGEETVE  180
STSIPSSNCR ALQANTHQIA DCNFAFNVEE CNPLMQSYWA TLPYQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-58HD-ZIP family protein