PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019186865.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 540aa MW: 60052.2 Da PI: 9.6392

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019186865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_019186865.1 59 KGGWTPEEDDMLKKAVAAYNGKCWKKIAEFFP-SRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	61.3	2.1e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G W+ Ia+ ++ gR +kqc++rw+++l XP_019186865.1 111 KGPWTQEEDDRIIELVEEYGATKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	54.5	2.6e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l++a++ G++ W++Ia+ ++ gRt++ +k++w++ XP_019186865.1 163 KDAWTLEEELALINAHHVNGNK-WAKIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MDQARTEDCW VENKQSTAAS SSSASENSGS TNFKSPGISS PMPSSPSHQR ASGPIRRAKG 60 GWTPEEDDML KKAVAAYNGK CWKKIAEFFP SRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 RIIELVEEYG ATKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALINAHHV 180 NGNKWAKIAK VLPGRTDNAI KNHWNSSLKK KMDFYLATGN LPPAAKNGHQ NSCKDISRTV 240 TKNKRLQCSK KQSDSTGLES PATTDICIFQ VDGKVHQEPR TPITVMNMGA STSNSGSARY 300 EVQSSVCPQR IDTIHAISST DLKFESCRVS DENGQHKLAF SGIPTCITVY YDSPHYVQLE 360 RNHQNLPWAH HESPQSPSLP PATFLTPPSS KGSNLYGQTP ESILKIAAQS FPNTPSILRK 420 RKTDARLITP SKVVDGKNPR TPRTSSEEQR TDMSENSDLQ DGSPSRNSSY NNSGLNSTHV 480 YNASPPYRLK SKRTSVLKSV EKQLEFAFES DDTTTSSNST VKQISQATKD LPHKTKMPIT

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MDQARTEDCW VENKQSTAAS SSSASENSGS TNFKSPGISS PMPSSPSHQR ASGPIRRAKG  60
GWTPEEDDML KKAVAAYNGK CWKKIAEFFP SRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
RIIELVEEYG ATKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALINAHHV  180
NGNKWAKIAK VLPGRTDNAI KNHWNSSLKK KMDFYLATGN LPPAAKNGHQ NSCKDISRTV  240
TKNKRLQCSK KQSDSTGLES PATTDICIFQ VDGKVHQEPR TPITVMNMGA STSNSGSARY  300
EVQSSVCPQR IDTIHAISST DLKFESCRVS DENGQHKLAF SGIPTCITVY YDSPHYVQLE  360
RNHQNLPWAH HESPQSPSLP PATFLTPPSS KGSNLYGQTP ESILKIAAQS FPNTPSILRK  420
RKTDARLITP SKVVDGKNPR TPRTSSEEQR TDMSENSDLQ DGSPSRNSSY NNSGLNSTHV  480
YNASPPYRLK SKRTSVLKSV EKQLEFAFES DDTTTSSNST VKQISQATKD LPHKTKMPIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-130	MYB family protein