PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187053.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 637aa MW: 71846.3 Da PI: 10.3559

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	30	63	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 +W+t+E++ll+ vk++G ++W+++a ++ +R+ XP_019187053.1 30 TAWSTWEELLLAFSVKRHGLKDWDSVAMELR-NRS 63 68*****************************.776 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MYINCLVIIL RGKGKGVIVM SKIAETQKKT AWSTWEELLL AFSVKRHGLK DWDSVAMELR 60 NRSSLPALLT AQICEEKYRD LQRRFTNSDT IVEEDDGRGG GGGDVVIPWL EDLRQLRVAE 120 LKQEVHHRDL SIQSLKLKVK RMEEEREQSM KERQEKAMKP DLEDGRKENS ANDATDGGGE 180 KLDGIVGEVV SGGNSAHENR SFNESNSVEK REPDPVHVTE TKPDPQAKPA RENSCKDSSD 240 RHEASKTRQE SKGNDVPNDE RKEGSDVESS ACLKMKRRKR GEAAGGEQVA AMWSPAKRAG 300 AVKSEPLVRL LDVIRSHKHG SVFKRRLQVQ KTAKYKSIIR RHVDLETVQA RIDDGSYSSC 360 STKFYLDLLL LFNNAIVFFP KSSPESIAAH QLRSLVMKEL KIKNMNNQTP LSSSTTPPPP 420 TKAQPDPEQD SSDSLLRCTT AAPIVVCRRR SSISAKATAA PGDDTSPKED DSLAKLKMKE 480 RSPVTRVRSM RRTSKGRLNL NHSQPTKQPD EEEEEEEEVA KAEKKKKKEE VSSIDKKRKA 540 ADFLKRINKS SPTKETSSMD TQKKTPRDGR RQLKRNATKK KDGPATRQNA AKKSKEEESF 600 PVKRRVGRPR RDAASDKLVK EQDKDDYSKR PKKRIRS

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MYINCLVIIL RGKGKGVIVM SKIAETQKKT AWSTWEELLL AFSVKRHGLK DWDSVAMELR  60
NRSSLPALLT AQICEEKYRD LQRRFTNSDT IVEEDDGRGG GGGDVVIPWL EDLRQLRVAE  120
LKQEVHHRDL SIQSLKLKVK RMEEEREQSM KERQEKAMKP DLEDGRKENS ANDATDGGGE  180
KLDGIVGEVV SGGNSAHENR SFNESNSVEK REPDPVHVTE TKPDPQAKPA RENSCKDSSD  240
RHEASKTRQE SKGNDVPNDE RKEGSDVESS ACLKMKRRKR GEAAGGEQVA AMWSPAKRAG  300
AVKSEPLVRL LDVIRSHKHG SVFKRRLQVQ KTAKYKSIIR RHVDLETVQA RIDDGSYSSC  360
STKFYLDLLL LFNNAIVFFP KSSPESIAAH QLRSLVMKEL KIKNMNNQTP LSSSTTPPPP  420
TKAQPDPEQD SSDSLLRCTT AAPIVVCRRR SSISAKATAA PGDDTSPKED DSLAKLKMKE  480
RSPVTRVRSM RRTSKGRLNL NHSQPTKQPD EEEEEEEEVA KAEKKKKKEE VSSIDKKRKA  540
ADFLKRINKS SPTKETSSMD TQKKTPRDGR RQLKRNATKK KDGPATRQNA AKKSKEEESF  600
PVKRRVGRPR RDAASDKLVK EQDKDDYSKR PKKRIRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	524	539	KKKKKEEVSSIDKKRK
2	525	540	KKKKKEEVSSIDKKRK
3	630	636	RPKKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	4e-89	MYB_related family protein