PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187120.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 325aa MW: 35775 Da PI: 7.8567

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.3	1.1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl XP_019187120.1 14 KGPWSPEEDAKLKDYIEKQGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.7	9.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ XP_019187120.1 69 GEFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KQGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL 120 VTFSSSSSSS TTTSQKTCRP HHQTPAYPPP SIVSSSPYSS PSTISSPPPL IKCNNYFPSP 180 TFQDFQAAAV ALSIPPQHSA YVGPIQNQPH HMVMTDRVLN FGAASCSSSD GSCTVNNQIT 240 HGGKDNNQVV EFDYSETYGG LQSFVYDNGD VKPSVVESGG CYAAGNNPLD YSSLEEIKQL 300 ISTNNMCNNF FVDENKTPEN VVLYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-78	MYB family protein