PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187266.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 426aa MW: 46509.8 Da PI: 4.783

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.6	3.4e-37	120	219	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 klfqrlw++eDei lLqG+++++a++g+ s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ v+k+ gke +f+++hdq +fe+s XP_019187266.1 120 KLFQRLWTDEDEIELLQGFLEYTAQRGAtnsSHHHDTTAFYDQIKNKLQLEFNKNQLVEKLRRLKKKYRNVVSKIGGGKEYVFKSAHDQATFEIS 214 579**********************98745555******************************************************** PP DUF573 93 kkiWg 97 +kiW XP_019187266.1 215 SKIWS 219 **6 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MASDQHHPVY NDEDLEADDD EESLDRPPTV LDEEDDDEED VEDDSTSSSN LAAPDPLRPA 60 PPAAVMPSSA DVTIAVASVR ADPIQLNSKR HLDNITVAAA TTVSVVEDKK PSAAFDDSRK 120 LFQRLWTDED EIELLQGFLE YTAQRGATNS SHHHDTTAFY DQIKNKLQLE FNKNQLVEKL 180 RRLKKKYRNV VSKIGGGKEY VFKSAHDQAT FEISSKIWSN CGSAIRGGPV GPTAVVDDAG 240 YEDEYANPNP NQIPNFIDHS PNPNSNSVDM KTPRSRKRSR AGAAVKVEEK QGLIQHHYQP 300 PPPSANVATP IPNTTTAAAA TAQTAVMATP IPSLIEETVK SCLSPVFKEL LNNVTHLNGG 360 SKGFGLGLAL SPIPLGFGGG PLGAEIMADE KWRKQQILEL EVYSKRLALV QDQIKAQLEE 420 LRSMGS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MASDQHHPVY NDEDLEADDD EESLDRPPTV LDEEDDDEED VEDDSTSSSN LAAPDPLRPA  60
PPAAVMPSSA DVTIAVASVR ADPIQLNSKR HLDNITVAAA TTVSVVEDKK PSAAFDDSRK  120
LFQRLWTDED EIELLQGFLE YTAQRGATNS SHHHDTTAFY DQIKNKLQLE FNKNQLVEKL  180
RRLKKKYRNV VSKIGGGKEY VFKSAHDQAT FEISSKIWSN CGSAIRGGPV GPTAVVDDAG  240
YEDEYANPNP NQIPNFIDHS PNPNSNSVDM KTPRSRKRSR AGAAVKVEEK QGLIQHHYQP  300
PPPSANVATP IPNTTTAAAA TAQTAVMATP IPSLIEETVK SCLSPVFKEL LNNVTHLNGG  360
SKGFGLGLAL SPIPLGFGGG PLGAEIMADE KWRKQQILEL EVYSKRLALV QDQIKAQLEE  420
LRSMGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	9e-70	GeBP family protein