PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187993.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 252aa MW: 26585.9 Da PI: 10.5223

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.9	3.6e-38	30	122	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......k 89 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+s + + + XP_019187993.1 30 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSSS--TTSpsisaplD 122 79******************************************************************88832222222222..11111212221 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MSTSAEANGA IIDPKQRQQQ PPPSNGALVV KKPPAKDRHS KVDGRGRRIR MPIVCAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTIPASFS TVSVSVRNSS STTSPSISAP 120 LDQKPSHSLI SSAPFILGKR LRSEEDGLDG GGNKDDVAGT ATVVGPTAGF WAIPPRPDFG 180 QVWSFAAAPH EMVVPTPALN SHPSRFLQQQ MGEASAARVG NYLPIAQGHL NLLASLSGPP 240 PPSSGRRDDD GR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-83	TCP family protein