PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188105.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 352aa    MW: 38526.9 Da    PI: 6.8
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2794176271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_019188105.1  94 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 176
                     689********...*****999*******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MVNNREDGEK NPSIGGNSGV TRSWGTTFSA QSVSTSGSVG SPSSRSEAAM ATPASETTFA  60
RLDSLDIHGD DAGSQRSAAG KKKRGQRAVG GDKSGRGLRQ FSMKVCEKVE SKGRTTYNEV  120
ADELVAEFAD PNNNFASPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRA  180
SVNDVEELKT ESLGLRNRIE KKAAYLEELE EQYTGLQNLI KRNEQLYSSG NTPSGGVALP  240
FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNYV LKAMKFCERP KSNAVARNLS  300
ANGWEGSSNT NTSQSQIPHP PMPNIPGRSA TSPPIPGILK PCVKHEPPPS ST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137E2F/DP family protein