PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188308.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 203aa    MW: 22289.4 Da    PI: 5.6231
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.31.6e-358106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+apyf++++ p+ fa+vhk+FGasnv+kll +lp ++r  a+ s++yeA+ar++dP+y +++ i +lqqq+ +l+a++
  XP_019188308.1   8 PCGACKFLRRRCVPECVFAPYFCSDHgPAIFAAVHKVFGASNVSKLLLQLPVHQRFGAVFSIAYEAQARMEDPIYDCLSYIIALQQQVLNLQAKV 102
                     7***********************9989*****************************************************************99 PP

          DUF260  95 allk 98 
                      +++
  XP_019188308.1 103 MEAR 106
                     8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MASGASSPCG ACKFLRRRCV PECVFAPYFC SDHGPAIFAA VHKVFGASNV SKLLLQLPVH  60
QRFGAVFSIA YEAQARMEDP IYDCLSYIIA LQQQVLNLQA KVMEARALQA QYLLNSMNAG  120
NQWATTTVGG LPEPFSAADQ NATNPRYSVD HFNDGGFWPP EMYTGEEAVL FPAEGSNMQR  180
DSPSDLGELQ VLALKMTKTE PRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-53LBD family protein