PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188310.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 173aa    MW: 18760.2 Da    PI: 6.6476
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.63.7e-23885177
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77
                    +C aCk+lr +C+++Cv+a yf+ ++ +  fa vhk+F +snv+kll +lp ++r +a+ s++ye +ar++ P   a 
  XP_019188310.1  8 PCGACKFLRWRCVPECVFASYFCFDHgSTIFATVHKVFDTSNVSKLLLQLPVHQRFAAIFSITYETQARMKTPSMAAS 85
                    7**********************9997899*******************************************87765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MASGVSSPCG ACKFLRWRCV PECVFASYFC FDHGSTIFAT VHKVFDTSNV SKLLLQLPVH  60
QRFAAIFSIT YETQARMKTP SMAASPTSLL CNNRYHGLEP GSGSDGSKSS ACAVLANSMN  120
AGTPMVGGPP VPFPATDQNA TNPYYSVDHF NDGRFWPPEM YTGEEVVLFP AEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-28LBD family protein