PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188338.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 752aa MW: 87089.2 Da PI: 8.4299

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.6e-21	57	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAkevGF+vr ++++++ r g++ + +Cs+eg+++e+k++ ++++rr+r+++r+gCka++ ++k k+g ++v+++el H+H l+ XP_019188338.1 57 DFYIKYAKEVGFDVRHDTKRQN-RAGQVAIKYIMCSREGYKAETKETpnnpNQRKRRRRVSNRVGCKARMGMSKCKSGGYKVHTIELRHTHCLC 149 6**************99888.6666999999*******9999999999***********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MEYTPPWLPG EDHCANKVQQ CAMEIGADGA KFWTPATDNE KTPYEGQQFE TVEAGIDFYI 60 KYAKEVGFDV RHDTKRQNRA GQVAIKYIMC SREGYKAETK ETPNNPNQRK RRRRVSNRVG 120 CKARMGMSKC KSGGYKVHTI ELRHTHCLCS EEGRTFLKIN RQLDIGHKTF LANCAKANIG 180 PTKAFRLFKE MVGSFTEVGA TCIDFCNFRR DILAYIAEAD AQMVIEEMFK RKEDNPHFYF 240 DFDIDEEAQL TRLFWADAES RRNFACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKRCIT 300 FAGGLIAKED IESYEWLLTK FKDAMEYTPR CTITDQDPAL KVVIPQTMPT TRHRFCMWHI 360 MTKVGEKVGV TLWHNEDFKK DLNSTVWDDT LTIEEFESKW KTVMKQYNLE EHRWFTQLYE 420 ARASWIPAYF HNIPMGGLLR TTSRSESTNS YFGKFTNPHC SLVEFMAQYN SAIGEQRHNQ 480 LKVIAENEGS YPKTKSPLSI EKHAAKIYTI SIFYEIQQEI WEAGFTCHIR DQTKEGEIWK 540 YRIEDTSGKM FEVTQHPASK NIECACNKFN RMGLLCRHVV LVMKAEGYDT IPEKYIVTRW 600 TRSACAHPMY DVPWATKTNN TKTNEATKMA NKLWSEFYTC MGLAKGWPDR MDQMLATLQQ 660 LKKDLEMEMQ ETHENGNNKS AFERLIGAHR PGDIQIKPPT VAKNKGSGRR IKSNKEKATE 720 KRHSKKERTC NICDLPGHNS RTCPDKVTPY ES

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MEYTPPWLPG EDHCANKVQQ CAMEIGADGA KFWTPATDNE KTPYEGQQFE TVEAGIDFYI  60
KYAKEVGFDV RHDTKRQNRA GQVAIKYIMC SREGYKAETK ETPNNPNQRK RRRRVSNRVG  120
CKARMGMSKC KSGGYKVHTI ELRHTHCLCS EEGRTFLKIN RQLDIGHKTF LANCAKANIG  180
PTKAFRLFKE MVGSFTEVGA TCIDFCNFRR DILAYIAEAD AQMVIEEMFK RKEDNPHFYF  240
DFDIDEEAQL TRLFWADAES RRNFACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKRCIT  300
FAGGLIAKED IESYEWLLTK FKDAMEYTPR CTITDQDPAL KVVIPQTMPT TRHRFCMWHI  360
MTKVGEKVGV TLWHNEDFKK DLNSTVWDDT LTIEEFESKW KTVMKQYNLE EHRWFTQLYE  420
ARASWIPAYF HNIPMGGLLR TTSRSESTNS YFGKFTNPHC SLVEFMAQYN SAIGEQRHNQ  480
LKVIAENEGS YPKTKSPLSI EKHAAKIYTI SIFYEIQQEI WEAGFTCHIR DQTKEGEIWK  540
YRIEDTSGKM FEVTQHPASK NIECACNKFN RMGLLCRHVV LVMKAEGYDT IPEKYIVTRW  600
TRSACAHPMY DVPWATKTNN TKTNEATKMA NKLWSEFYTC MGLAKGWPDR MDQMLATLQQ  660
LKKDLEMEMQ ETHENGNNKS AFERLIGAHR PGDIQIKPPT VAKNKGSGRR IKSNKEKATE  720
KRHSKKERTC NICDLPGHNS RTCPDKVTPY ES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	114	QRKRRRR
2	109	113	RKRRR
3	110	115	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-89	FAR1 family protein