PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188366.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 377aa MW: 42420.9 Da PI: 4.9688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l+d+++ G g+W++ ++ g+ R++k+c++rw +yl XP_019188366.1 14 RGRWTAEEDQILADYIHANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e++++ ++ lG++ W++Ia+ ++ gRt++++k++w+++l XP_019188366.1 67 RGKFSPQEEEIIIKSHAILGNR-WSLIAAQLP-GRTDNEIKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRTPCCEKV GLKRGRWTAE EDQILADYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGKF SPQEEEIIIK SHAILGNRWS LIAAQLPGRT DNEIKNYWNS HLSRKFYSII 120 RRAGSDKNIE NLETELAKVA EQTKRRPGKV SRSAMKKNKT TDYKHSSNNI NHAPGLQTQK 180 QDTTIPASLY TDDPVNNNNA ASSPPILMEK EDTIDTSSFL GSEHFSLDDI MPILMEEMQD 240 PAGTILSTSS LNSAKEIERD LAKSGDSGVD IYSGLIPSSD HNQFGGENSE STATSSSFPV 300 EHYCSLAQNI IDWDNDWQYC WDYDSGNNLC NTHNYLMPQQ NDDDVMLSSP WPWDDTFYDI 360 VVDNNNNNIA GEEGRVG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRTPCCEKV GLKRGRWTAE EDQILADYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGKF SPQEEEIIIK SHAILGNRWS LIAAQLPGRT DNEIKNYWNS HLSRKFYSII  120
RRAGSDKNIE NLETELAKVA EQTKRRPGKV SRSAMKKNKT TDYKHSSNNI NHAPGLQTQK  180
QDTTIPASLY TDDPVNNNNA ASSPPILMEK EDTIDTSSFL GSEHFSLDDI MPILMEEMQD  240
PAGTILSTSS LNSAKEIERD LAKSGDSGVD IYSGLIPSSD HNQFGGENSE STATSSSFPV  300
EHYCSLAQNI IDWDNDWQYC WDYDSGNNLC NTHNYLMPQQ NDDDVMLSSP WPWDDTFYDI  360
VVDNNNNNIA GEEGRVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-76	MYB family protein