PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188384.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 181aa    MW: 19720.4 Da    PI: 5.9779
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.73.9e-388106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+apyf++++ p+ fa+vhk+FGas+v+kll +lp ++r+da+ s++yeA+ar++dP+yG+v+ i +lqqq+ +l+ae+
  XP_019188384.1   8 PCGACKFLRRRCVPECVFAPYFCSDHgPAIFAAVHKVFGASKVSKLLLQLPVHQRSDAIFSIAYEAQARMEDPIYGCVSYIIALQQQVLNLRAEV 102
                     7***********************9989*****************************************************************99 PP

          DUF260  95 allk 98 
                      +++
  XP_019188384.1 103 MEAR 106
                     8776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MASGASSPCG ACKFLRRRCV PECVFAPYFC SDHGPAIFAA VHKVFGASKV SKLLLQLPVH  60
QRSDAIFSIA YEAQARMEDP IYGCVSYIIA LQQQVLNLRA EVMEARALHA QAQYLLNSMN  120
AGNQWATTTV GGPPEPFSVA DQNVTNPQYS VDHFNNGGSF WPPEMYTGEE AVPFPAEGSN  180
M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-50LBD family protein