PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188549.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 344aa MW: 38634.6 Da PI: 7.4392

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl XP_019188549.1 14 RGPWSPEEDAKLKDFIHKYGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	35.9	1.7e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ XP_019188549.1 69 GEFSDEEDRVICTLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KYGTGGNWIA LPHKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRVIC TLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKVMAM 120 MLLNNPSSSS SSHHRSRSSP MLFSSSSSSS SIAPPHLLHT QQLSFYTPAE SSFSGLDEHQ 180 SLSAPQNPNL LYDNQSYPYS FESQDQGFSN LMQFGGENNS NNLLMFGGTE ASGSSSDGIS 240 YGSKPEIKQE ADDHHHHPLL GATRFQSTNA HSWDHNNGGF DHHQDQIMNN NGYFGNTANN 300 DLDIVRKLVS SSSSVCNNNN NRLMLFNDIN KTDDERGMYQ CYYY

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KYGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC TLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKVMAM  120
MLLNNPSSSS SSHHRSRSSP MLFSSSSSSS SIAPPHLLHT QQLSFYTPAE SSFSGLDEHQ  180
SLSAPQNPNL LYDNQSYPYS FESQDQGFSN LMQFGGENNS NNLLMFGGTE ASGSSSDGIS  240
YGSKPEIKQE ADDHHHHPLL GATRFQSTNA HSWDHNNGGF DHHQDQIMNN NGYFGNTANN  300
DLDIVRKLVS SSSSVCNNNN NRLMLFNDIN KTDDERGMYQ CYYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-72	MYB family protein