PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188735.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 311aa    MW: 35013.5 Da    PI: 8.9442
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-092771345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a +++ ++   +Wk++a++++ g+t  ++   + 
   XP_019188735.1 27 KWTPAENKAFENALALYDKDtpdRWKKVAEMVP-GKTVSDVMRQYK 71
                     8********************************.****99988775 PP
2Myb_DNA-binding445.1e-14144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qk+
   XP_019188735.1 144 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKF 188
                      7*****************************99***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEILLPAASS YLSNSGWLFE ETMSFTKWTP AENKAFENAL ALYDKDTPDR WKKVAEMVPG  60
KTVSDVMRQY KELEDDISSI EAGLMDLIPF PANTTRSASV SASAFTLEWG CSHPFDAQKQ  120
CFAAGGKRPP ANRLPEQERK KGIPWTEEEH KLFLMGLKKY GKGDWRNISR NFVITRTPTQ  180
VASHAQKFFI RQHSGGKDKR RASIHDITTV NLNENQTPSP DTKNPPGSTD QPVVVSRHQK  240
MPFHWDHLGL NSAQANLFMS PPYGLDSSYG MNKMQSLGIQ RAAAMHHESS YFGSQIMPFQ  300
IQSAAPQYYH A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.17e-95MYB_related family protein