PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188885.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 382aa MW: 43431.9 Da PI: 5.6674

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.8	1.9e-22	289	338	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d + y +lpi++AA+ +++c+Tv+K+iCR+ G+ RWP+Rki+s+ XP_019188885.1 289 GKLRLKDFAGYLHLPIEEAARRMNICPTVMKKICRRDGLLRWPYRKIRSI 338 68999*******************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MADPSTTLGS AFFPCYDHHK HHPFDPHHHH LPFDQSGEIP SFFSPQSDFD FPFDGGDYAA 60 EDNIAYPSHP LVDPAVLSST TFGEVKDVPQ VWSEDVENPT PISAWPPAMA SICNNSCQVL 120 REITHTNGLY MLRLEIHGGL GMIAHAVLEK CCLDFLSQNP EYQTFDFSQE SMSAVKQFLV 180 GYFEDRKQEG YVVLEDPLWE FYEALSVGHG GGEDMDIDNF FQLPPTTHSG VYTFSSQFVN 240 PINCLLINLK PPKFLSKDTR EGNNHNEKNE EAEVKAQKIP LSAQRERTGK LRLKDFAGYL 300 HLPIEEAARR MNICPTVMKK ICRRDGLLRW PYRKIRSIHR KISNRSKSLS AGNVDAQERE 360 RARADILELQ QELARISEAF FD

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MADPSTTLGS AFFPCYDHHK HHPFDPHHHH LPFDQSGEIP SFFSPQSDFD FPFDGGDYAA  60
EDNIAYPSHP LVDPAVLSST TFGEVKDVPQ VWSEDVENPT PISAWPPAMA SICNNSCQVL  120
REITHTNGLY MLRLEIHGGL GMIAHAVLEK CCLDFLSQNP EYQTFDFSQE SMSAVKQFLV  180
GYFEDRKQEG YVVLEDPLWE FYEALSVGHG GGEDMDIDNF FQLPPTTHSG VYTFSSQFVN  240
PINCLLINLK PPKFLSKDTR EGNNHNEKNE EAEVKAQKIP LSAQRERTGK LRLKDFAGYL  300
HLPIEEAARR MNICPTVMKK ICRRDGLLRW PYRKIRSIHR KISNRSKSLS AGNVDAQERE  360
RARADILELQ QELARISEAF FD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-10	Nin-like family protein