PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188936.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 395aa MW: 45607.5 Da PI: 6.8212

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.2e-20	48	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA +vGF+vr+ k+++++++++++++ f Csk g+++++ k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019188936.1 48 DMYNDYAFRVGFNVRRGKQRYNSTTKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENGMWIVSKHEKLHNHELVP 134 58**************************************99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MYDSIAQQDM AETEHTTDPV GVVDTEDANS ADQDLVGMSV CSVDEAYDMY NDYAFRVGFN 60 VRRGKQRYNS TTKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAFVQ FDLHENGMWI 120 VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADSVR FLKTQSGGSP 180 LVGFTSRDAY NSLCTDALNI LDGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESRLCSFFW 240 RDGRMRRDYD LFGDLLVHDT TYRTNKYDMI CGPFVGMNNH CMNVMFGCGF LMNEKIESFV 300 WLFKTFLRSM DYRSPQSIMT DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRNQ 360 KDFLDIFNCL LKYTDTEAEF EFYWTRYVSD DGYNI

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MYDSIAQQDM AETEHTTDPV GVVDTEDANS ADQDLVGMSV CSVDEAYDMY NDYAFRVGFN  60
VRRGKQRYNS TTKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAFVQ FDLHENGMWI  120
VSKHEKLHNH ELVPPSKSYL LRSHRMVSRN HISYLTDLKS SGVSVADSVR FLKTQSGGSP  180
LVGFTSRDAY NSLCTDALNI LDGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESRLCSFFW  240
RDGRMRRDYD LFGDLLVHDT TYRTNKYDMI CGPFVGMNNH CMNVMFGCGF LMNEKIESFV  300
WLFKTFLRSM DYRSPQSIMT DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRNQ  360
KDFLDIFNCL LKYTDTEAEF EFYWTRYVSD DGYNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-60	FAR1 family protein