PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188940.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 248aa    MW: 27792.7 Da    PI: 6.6695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.2e-18158192135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_019188940.1 158 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 192
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MDIYGGVSAP ELFRIDDLLD FSNADIFSSS AVDDSSNHHL LPHSAETTSS PADNYFFNPH  60
SSADFTHDLC VPSEDAAELE WLSTFVEDSF SDIAANSTMN LTASSAAFQG RSRSKRSRSA  120
ATGWTAAMQP PPPPQETVTH EISNNKKRES SEDVPRRCTH CASEKTPQWR TGPLGPKTLC  180
NACGVRFKSG RLVPEYRPAA SPTFVLTQHS NSHRKVMELR RQKELFRQQQ QQQQQQQQEM  240
YGRHFQVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116RSRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-68GATA family protein