PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188967.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 489aa MW: 51160.2 Da PI: 6.6005

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.3e-15	301	346	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_019188967.1 301 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 346 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MTQCVPSWDV EDNSTTTVTI NGVAQSGSSS FGVDVPSLDY EVAELTWENG QLAMHGLGPP 60 RVPSKLLAAA SAVKYTWDKP RAGGTLESIV SQATCMPATH GKGGGDGGRG GGGGELVPWF 120 DHHGGGAGDN PAAAAASVTV TMDALVPCAN NNNSNTNTPA ATARVAGFSG LVGSCSGAGA 180 ATREASLARV GGAAAHDWSN RGADQMSMSG SATYGRDSQQ VTIETTYDRD LGTEAYTSAS 240 MGSPENTSSD KQCTNKSNDD NDHSVCHSRS QREIGSDDED KKKGNGKSSV STKRSRAAAI 300 HNQSERKRRD KINQRMKTLQ KLVPNSSKTD KASMLDEVIE YLKQLQAQVQ MMSRMNMSPM 360 MFPLAMQQQL QMSMMAPAAA AAMGMNMGMG MGVMDMNSVA AAAGRSNIPG IPGLLHPAAA 420 SAAAAAFMPM AAWWENSLDR MPTAAASSMM PDPLTAFLAS QSQPMTMDAY SRMAALYQQF 480 QQAPGGTKN

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MTQCVPSWDV EDNSTTTVTI NGVAQSGSSS FGVDVPSLDY EVAELTWENG QLAMHGLGPP  60
RVPSKLLAAA SAVKYTWDKP RAGGTLESIV SQATCMPATH GKGGGDGGRG GGGGELVPWF  120
DHHGGGAGDN PAAAAASVTV TMDALVPCAN NNNSNTNTPA ATARVAGFSG LVGSCSGAGA  180
ATREASLARV GGAAAHDWSN RGADQMSMSG SATYGRDSQQ VTIETTYDRD LGTEAYTSAS  240
MGSPENTSSD KQCTNKSNDD NDHSVCHSRS QREIGSDDED KKKGNGKSSV STKRSRAAAI  300
HNQSERKRRD KINQRMKTLQ KLVPNSSKTD KASMLDEVIE YLKQLQAQVQ MMSRMNMSPM  360
MFPLAMQQQL QMSMMAPAAA AAMGMNMGMG MGVMDMNSVA AAAGRSNIPG IPGLLHPAAA  420
SAAAAAFMPM AAWWENSLDR MPTAAASSMM PDPLTAFLAS QSQPMTMDAY SRMAALYQQF  480
QQAPGGTKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	114	GGRGGGGG
2	305	310	ERKRRD
3	306	311	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-80	bHLH family protein