PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189091.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25507.6 Da PI: 6.3272

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	32	83	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ F+ + ++ ++++ + A+ lgL+ rqV +WFqN+Ra++k XP_019189091.1 32 KRFSNEQVKSLETIFKLETKLETKKKLQVARDLGLQPRQVAIWFQNKRARWK 83 58*************************************************9 PP
2	HD-ZIP_I/II	112.8	2.2e-36	31	116	3	88
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+s+eqvk+LE+ F+ e+kLe+++K ++ar+Lglqprqva+WFqn+RAR+k+kq+E+dy++Lk+++d+l+ + ++L+ke+++L XP_019189091.1 31 SKRFSNEQVKSLETIFKLETKLETKKKLQVARDLGLQPRQVAIWFQNKRARWKSKQIEEDYRVLKAKFDNLNVQFDNLKKEKDSLL 116 69********************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MEEEEEEHQA SETHESVGFQ KGSKKKKSKN SKRFSNEQVK SLETIFKLET KLETKKKLQV 60 ARDLGLQPRQ VAIWFQNKRA RWKSKQIEED YRVLKAKFDN LNVQFDNLKK EKDSLLIQSE 120 KLRSELETKD MEMGSGSHNK DTNYESKESV NGGRSIVRVE EDEEKDKALL AEKFKQKEEA 180 EFLNLGELGG SPLASPEQWC SGSLNIPFDQ SCGTPKWWDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-27	HD-ZIP family protein