PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189144.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 141aa MW: 15970.6 Da PI: 8.6144

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	146.2	3.1e-45	11	139	1	139
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAeav++++++la+al+++++ la +++ m+++a yf+eALa+r+++ + p++t e++ +++l++ f+e++P+lkf+h XP_019189144.1 11 LVHALMACAEAVQQENFKLADALVKHIRILAVSQAGRMRKVANYFAEALARRIYK--------IYPQDTLESSYTDVLQM--HFYETCPYLKFAH 95 689*************************************************9........44666655555555544..4******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139 +taNqaIl+a+ ++rvH+iD+ ++qG+QWp L+qaLa Rp+g+ XP_019189144.1 96 FTANQAILKAFTDCSRVHVIDLCLKQGMQWPVLMQALALRPSGS 139 ***************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence
MVDYQEAGVR LVHALMACAE AVQQENFKLA DALVKHIRIL AVSQAGRMRK VANYFAEALA 60 RRIYKIYPQD TLESSYTDVL QMHFYETCPY LKFAHFTANQ AILKAFTDCS RVHVIDLCLK 120 QGMQWPVLMQ ALALRPSGST G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-70	GRAS family protein