PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189233.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 770aa MW: 87733.8 Da PI: 7.3482

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9.5e-21	104	190	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs+rk k+++ + ++ +++ f+Csk+g+r ++ ++ ++ +tr gC+a+ + +++gkw+vtk ++eHnHel+p XP_019189233.1 104 YNDYAFRMGFSTRKGKQYYVTGTRILKTKVFCCSKSGFRIIPDNP--NKCYSKIVTRSGCNAMCQFDIDSNGKWVVTKHVKEHNHELCP 190 9*****************9999************99988..88999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
MNKIVVTNRI EEIDSNSMIV DENSSVFAGK DHIPVAGECI SPIAFDVPCT NFVDDNEYIP 60 DDFDNSIAVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSTRKGKQ 120 YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH 180 VKEHNHELCP ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGICFLKC QSGGSPFVGF 240 TPRDAYNMIY SDSAKHLDGT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LYNFFWRDGQ 300 IKADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVSLFK 360 VFVRSMGGKH PQTVMTDQCA AMAAGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL 420 ELFNFLLKYT DTEAEFEFYW TRMMTEYGCH KNVWLNKLYS IREKWCPAFS KEYFSGGILS 480 SQRSESTNHS ISRRLSKTAG LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL 540 LSHARDIYTI EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND 600 LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL 660 SIASSVWGIQ MGRKFQQLVL SSQANCKARE VCENAFEDAR RKVEGDIGPI VIEDGEEQIA 720 GVIQNPARNR AKGERNRRHI STIEKKYNQV RGRKLGVKIA EMSTKAASIC

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

MNKIVVTNRI EEIDSNSMIV DENSSVFAGK DHIPVAGECI SPIAFDVPCT NFVDDNEYIP  60
DDFDNSIAVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSTRKGKQ  120
YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH  180
VKEHNHELCP ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGICFLKC QSGGSPFVGF  240
TPRDAYNMIY SDSAKHLDGT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LYNFFWRDGQ  300
IKADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVSLFK  360
VFVRSMGGKH PQTVMTDQCA AMAAGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL  420
ELFNFLLKYT DTEAEFEFYW TRMMTEYGCH KNVWLNKLYS IREKWCPAFS KEYFSGGILS  480
SQRSESTNHS ISRRLSKTAG LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL  540
LSHARDIYTI EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND  600
LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL  660
SIASSVWGIQ MGRKFQQLVL SSQANCKARE VCENAFEDAR RKVEGDIGPI VIEDGEEQIA  720
GVIQNPARNR AKGERNRRHI STIEKKYNQV RGRKLGVKIA EMSTKAASIC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	728	738	RNRAKGERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-89	FAR1 family protein