PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189497.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 196aa    MW: 21813.7 Da    PI: 8.7512
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2139.8e-6671694170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                       ++eq+Cy+ CnfCn +lavsvP +sl+++vtvrCGhCt+l svn+a a +  l+++s        +  ++++ +  n++s + + + +s++ +
  XP_019189497.1   7 AAAPEQLCYIPCNFCNIVLAVSVPCSSLYEIVTVRCGHCTNLWSVNMAAAFHHsLSSSSP-----PSSPWQDHRAQVPNYTSPEYMGNGSSSKFN 96 
                     5689******************************************99876550555443.....223445555565566555555555444444 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +++ ++     + +   v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_019189497.1  97 HKMPTRPPITTSIEERIVNRPPEKRARVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 169
                     433233333333444569*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSTCNAAAAP EQLCYIPCNF CNIVLAVSVP CSSLYEIVTV RCGHCTNLWS VNMAAAFHHS  60
LSSSSPPSSP WQDHRAQVPN YTSPEYMGNG SSSKFNHKMP TRPPITTSIE ERIVNRPPEK  120
RARVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LDSNNNQPKL  180
GVSEGTGKRL CKGLQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.17e-83YABBY family protein