PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189643.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 274aa    MW: 30940.9 Da    PI: 7.2043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd ll+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_019189643.1 26 RGPWTPEEDTLLIHYIACHGEGRWNLLAKSSGLRRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding491.4e-1579122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_019189643.1  79 RGNLSPQEQLLILELHSKWGNR-WSKIAQFLP-GRTDNEIKNYWRT 122
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MASSPSKSST SSCLTAEDMD STELRRGPWT PEEDTLLIHY IACHGEGRWN LLAKSSGLRR  60
TGKSCRLRWL NYLKPDVKRG NLSPQEQLLI LELHSKWGNR WSKIAQFLPG RTDNEIKNYW  120
RTRVQKQARH LKIDSNSAAF QQLIRGFWMP RLIQKIQASS IQHSDEILNT QSQQVPAPVP  180
PDCHQTTINS GLEFSECPKT ALSNDPKFEP CPNGNHQYYA SHVMDGFSPS PIFPETGEFK  240
DVIDYDLLGT GGGGGNSLIM DGFLDDSLWT MDKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-78MYB family protein