PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189666.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 343aa MW: 37505.1 Da PI: 8.3874

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	140.6	1.2e-43	107	254	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasn 84 kkdrhskihT+ g+RdRR+Rls+++a++fFdLqd+LGfdk+skt++WLl ++ aik+l ++ +ss secea+s + +++ XP_019189666.1 107 SKKDRHSKIHTAHGPRDRRMRLSLDVARKFFDLQDMLGFDKASKTVDWLLLNSRLAIKDLKQQnhcaaaagggggsAASSTSECEAASGVLDQEF 201 59***********************************************************99999999998765555578888888888884 PP TCP 85 sssg....kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + +++k+ + k++ + a+++ lakesr+kar+rarert+ k++++ XP_019189666.1 202 EPPMaahgSKEKKGTAAKPAGRVRAAFNPLAKESRNKARERARERTKMKNNNN 254 444466666666666778888888888******************999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MYPCSSSSST INICNFIYNN TPIPTSPMQY EDEHVLLQHI HTLLLQQEAD NFAAITPAAA 60 AAAAESGILN NSNDLQYFEN SSSTMMMTMK SNSASSNVVV VGKKKCSKKD RHSKIHTAHG 120 PRDRRMRLSL DVARKFFDLQ DMLGFDKASK TVDWLLLNSR LAIKDLKQQN HCAAAAGGGG 180 GSAASSTSEC EAASGVLDQE FEPPMAAHGS KEKKGTAAKP AGRVRAAFNP LAKESRNKAR 240 ERARERTKMK NNNNIMLGET PPPRQEMGGA THNVVKTTNN EPPSHQALPP MAAEELATSH 300 IHEHNWSLSN IFPPAATSHQ QHQFGEFPYS GKFCWEGYND GNL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MYPCSSSSST INICNFIYNN TPIPTSPMQY EDEHVLLQHI HTLLLQQEAD NFAAITPAAA  60
AAAAESGILN NSNDLQYFEN SSSTMMMTMK SNSASSNVVV VGKKKCSKKD RHSKIHTAHG  120
PRDRRMRLSL DVARKFFDLQ DMLGFDKASK TVDWLLLNSR LAIKDLKQQN HCAAAAGGGG  180
GSAASSTSEC EAASGVLDQE FEPPMAAHGS KEKKGTAAKP AGRVRAAFNP LAKESRNKAR  240
ERARERTKMK NNNNIMLGET PPPRQEMGGA THNVVKTTNN EPPSHQALPP MAAEELATSH  300
IHEHNWSLSN IFPPAATSHQ QHQFGEFPYS GKFCWEGYND GNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-21	TCP family protein