PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189680.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 140aa    MW: 15718.5 Da    PI: 5.8354
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB153.15.1e-4822111297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrflPianvsrimkkvlPan+      ketvqecvsefisf+t+eas kcqrekrktingddllwa++tlGfe+yveplkvyl++ r++ege
  XP_019189680.1  22 REQDRFLPIANVSRIMKKVLPANT------KETVQECVSEFISFITGEASYKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRSRDMEGE 110
                     89*******************985......7***************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_019189680.1 111 K 111
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MADSDNESGG HRDGHDGDSS QREQDRFLPI ANVSRIMKKV LPANTKETVQ ECVSEFISFI  60
TGEASYKCQR EKRKTINGDD LLWAMTTLGF EEYVEPLKVY LQRSRDMEGE KSAMAGRQEK  120
DGGGNGRRRT DVKGPCCPQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-60NF-YB family protein