PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189707.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26922.8 Da    PI: 7.2183
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-291059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCd+e+a+iifs++gkl+e++s
  XP_019189707.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDVEIALIIFSPRGKLHEFAS 59
                    8***********************************************86 PP
2K-box58.23.5e-2082174799
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +s+e +  e+lq+e++ +k +i+ L+ ++R+llG  L+s +++e + +eq++++s++ iR++K+++++++ie+l +k k l  en +L +k++
  XP_019189707.1  82 SSVEGQPIEQLQHEIEVMKHKIDCLEASKRRLLGLRLGSSTFEEVEMIEQHVQRSVNIIRARKMKIFKDSIEQLEEKGKVLTAENAMLWEKYK 174
                     347888899*******************************************************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEIALIIFSP RGKLHEFASS  60
SSQEIIEKYR KHVMNNRAEN PSSVEGQPIE QLQHEIEVMK HKIDCLEASK RRLLGLRLGS  120
STFEEVEMIE QHVQRSVNII RARKMKIFKD SIEQLEEKGK VLTAENAMLW EKYKGLEPHK  180
VSKEEDDSHD STLYVNGGDE KSDVETELFI GLPEVQIPVN DLLSQVIRVS TTYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-65MIKC_MADS family protein