PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189715.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 244aa    MW: 27061.3 Da    PI: 6.3616
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.53.8e-2267154291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      Yn YA++vGFsvrk +++++  +++i +++f C k g++e+ ++    +  ++   rtgC a ++ +   dg w vtk ++eHnHel++
  XP_019189715.1  67 LYNGYAYRVGFSVRKCQQRYKASTKSIQMKRFFCAKAGYKEKPNSG--VKIYSKIDIRTGCGALVQFEVGGDGMWTVTKHVKEHNHELCS 154
                     7****************************************99887..889999**********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MEETAVRGED SIGDLISAIP VNEDFVGDSI STDQVELNID IGGSSSSPVD EYLVGVVVNN  60
GDEAFELYNG YAYRVGFSVR KCQQRYKAST KSIQMKRFFC AKAGYKEKPN SGVKIYSKID  120
IRTGCGALVQ FEVGGDGMWT VTKHVKEHNH ELCSFGKSHL LRSHRKVGNN NLEYLKDMKN  180
SGVELADGMR FSKYQSGGSP LVGFTNRDAY NSMASESLKC LDGTDSNSLI EIFRRRQSNE  240
VDFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-18FAR1 family protein