PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189760.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 476aa MW: 52313.1 Da PI: 8.4689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.2	2.6e-17	174	223	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYIk Lq XP_019189760.1 174 RSKHSATEQRRRSKINDRFQMLRGIIPHS----DQKRDKASFLLEVIEYIKFLQ 223 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MRDVEKPLPP AHPAVEHVLP GGIGTYSISY LHQRSPKPND ENSDYSSCTR NESTLKKGMA 60 KKDNFAGDFR AVLRETGMNK GGGSQLGQPS QTPSNLKNKT ATFSSFLASQ QFSEQNNQSF 120 LDMIASSKSV REDDGDLEEE EEFVIKKEQS LHPKGNLSAK VDEKSSDQKP NTPRSKHSAT 180 EQRRRSKIND RFQMLRGIIP HSDQKRDKAS FLLEVIEYIK FLQEKVHKYE GSYQGCRDNE 240 TSKLPWSKCH SDAQGYIDHS QGKNNVSGPA LMFGAKFGGT RPWISLPIPI SEQNIESNMK 300 LACPKENDHQ IENNEKPVSL PMLPNAFPFC GTSNIVAQHS PKLALGRDAS TTSRHQSQCS 360 SDRSHITSQA VASDKSKDED LTVESGTISI SSMYSQGLLN TLTKALENSG VDLSQASISV 420 HVDLGKRSNG RLNNSSASTL KGDDVSTSNQ PMPHSITSTS QGECGQAQKR LKTSRG

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MRDVEKPLPP AHPAVEHVLP GGIGTYSISY LHQRSPKPND ENSDYSSCTR NESTLKKGMA  60
KKDNFAGDFR AVLRETGMNK GGGSQLGQPS QTPSNLKNKT ATFSSFLASQ QFSEQNNQSF  120
LDMIASSKSV REDDGDLEEE EEFVIKKEQS LHPKGNLSAK VDEKSSDQKP NTPRSKHSAT  180
EQRRRSKIND RFQMLRGIIP HSDQKRDKAS FLLEVIEYIK FLQEKVHKYE GSYQGCRDNE  240
TSKLPWSKCH SDAQGYIDHS QGKNNVSGPA LMFGAKFGGT RPWISLPIPI SEQNIESNMK  300
LACPKENDHQ IENNEKPVSL PMLPNAFPFC GTSNIVAQHS PKLALGRDAS TTSRHQSQCS  360
SDRSHITSQA VASDKSKDED LTVESGTISI SSMYSQGLLN TLTKALENSG VDLSQASISV  420
HVDLGKRSNG RLNNSSASTL KGDDVSTSNQ PMPHSITSTS QGECGQAQKR LKTSRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-56	bHLH family protein