PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189782.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 298aa    MW: 31934.9 Da    PI: 8.4919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09552347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      W+ eE++ + +a++++  +    +W++Ia++++  ++  ++k ++q +
   XP_019189782.1  5 VWSREEEKAFENAIAMHWVEdskeQWNKIASMVP-SKSVDELKQHYQLL 52
                     5****************99999************.***********965 PP
2Myb_DNA-binding38.91.9e-12131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_019189782.1 131 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 175
                      7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MPAVVWSREE EKAFENAIAM HWVEDSKEQW NKIASMVPSK SVDELKQHYQ LLVEDVCAIE  60
AGHVPVPTYI GEEPPTSTHG NSAITSSDKR SNAAAAAYGT GFSGAATHDS AAPGGGKGGS  120
RSDQERRKGI PWTEEEHRLF LLGLDKFGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN  180
SMNRDRRRSS IHDITSVNGG DVAAAHQPPI TGQQVNPTPS NVAAALGPAA KHRNQVNPHG  240
GLGMYGAPLG HPVPAPPGHI ASAVGTPVML PPGVGHHPPY MLPLAYPIAP PQPPNMHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-82MYB family protein