PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189897.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24734.6 Da    PI: 8.9399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.7e-231663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie k   qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ +
  XP_019189897.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63
                    78999999*************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MAKRPSMGRQ KIKIEKIEMK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV  60
FSFGHPNVEL IIDRFLSLNQ HPLSSNNATL QLVEAHRSAT VREMNLQLTQ IMAESEIERK  120
RGEALDEMRK ESRRQHWWEA PVCELGLPEL QQLRDAMEEL KKNVSAQAEK INTCTVLAMD  180
GKTTGYPETK PPRIMVNYTH HHHQALHDFG YDLTFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-55M-type_MADS family protein