PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189967.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 469aa MW: 54794.3 Da PI: 8.2373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	61	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA e+GF+vr +++++ r ge++ + + Cs+eg+++++k+ +e+++r+r+++r+gC a+++++k ++g ++v+ ++l H H l+ XP_019189967.1 61 DFYETYAMEAGFDVRHGTKRRN-RFGEVYIKYMLCSREGYKAKRKEPnnttKERNKRRRVSNRIGCMARMVITKCDTGGYKVHAVQLRHKHCLC 153 6***************9999.777799999*****999988888788888999******************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MDANFGTMPP PPPGEEQSEP NVKQCHMEIG DDGDKYWTPA TQKQTTPYEG QRFETIEAEI 60 DFYETYAMEA GFDVRHGTKR RNRFGEVYIK YMLCSREGYK AKRKEPNNTT KERNKRRRVS 120 NRIGCMARMV ITKCDTGGYK VHAVQLRHKH CLCSEDNRPF LKINRQLDIG HKTFLANCAK 180 ANIGPTKAFR LFKEMVGSFT DIGATCIDFC NFRRDLLAYI AEADAQMVIE DLFKRKEANP 240 DFYFDFDIDE EAQLSRIFWA DAESRRNFAC FGDVMSFDAT YSTNRYKLVF VPFTGVDNHK 300 RCITFGAGLI AKEDVESYEW LLKRFKTAME YTPRCTITDQ DPALKIAVPQ TMPTTRHRFC 360 MWHIMTKVGE KVGVTLWHND NFKKELNSIV WDDTLPVDEF ERKWKTLMKD FNLEEHRWFA 420 QLYEARASWI PAYFTDIPMG GLLRTTSRSE SENSYFGKQL SHARRNMRT

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MDANFGTMPP PPPGEEQSEP NVKQCHMEIG DDGDKYWTPA TQKQTTPYEG QRFETIEAEI  60
DFYETYAMEA GFDVRHGTKR RNRFGEVYIK YMLCSREGYK AKRKEPNNTT KERNKRRRVS  120
NRIGCMARMV ITKCDTGGYK VHAVQLRHKH CLCSEDNRPF LKINRQLDIG HKTFLANCAK  180
ANIGPTKAFR LFKEMVGSFT DIGATCIDFC NFRRDLLAYI AEADAQMVIE DLFKRKEANP  240
DFYFDFDIDE EAQLSRIFWA DAESRRNFAC FGDVMSFDAT YSTNRYKLVF VPFTGVDNHK  300
RCITFGAGLI AKEDVESYEW LLKRFKTAME YTPRCTITDQ DPALKIAVPQ TMPTTRHRFC  360
MWHIMTKVGE KVGVTLWHND NFKKELNSIV WDDTLPVDEF ERKWKTLMKD FNLEEHRWFA  420
QLYEARASWI PAYFTDIPMG GLLRTTSRSE SENSYFGKQL SHARRNMRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	118	KRKEPNNTTKERNKRRR
2	115	119	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-68	FAR1 family protein