PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190032.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 237aa MW: 27085.1 Da PI: 5.8616

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.1e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd+ l v ++G +W+ ++ g+ R++k+c++rw +yl XP_019190032.1 14 KGGWSKEEDDMLRAHVLKHGHQNWRQLPNLAGLLRCGKSCRLRWVNYL 61 688***************************99**********97 PP
2	Myb_DNA-binding	57.4	3.3e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+ +++++kqlG++ W++Ia++++ gR+++++k++w++ XP_019190032.1 67 RGNFTKDEDQVILNLHKQLGNK-WSAIAARLP-GRSDNEIKNHWHTC 111 89******************.*****.*********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MVRTPSVDQN GKRKGGWSKE EDDMLRAHVL KHGHQNWRQL PNLAGLLRCG KSCRLRWVNY 60 LKPGIKRGNF TKDEDQVILN LHKQLGNKWS AIAARLPGRS DNEIKNHWHT CLKKFDNVGV 120 MESSKTRSPS HADDDAQSVQ SSDKSQQHLA PFGLLQAAME TLPLFSPETE PFSYFMDSAV 180 LGSEEGTSND GETSFQERSD QRLWNDDDSR ELEQQDFFIP DRLFADEEIQ SLLNDFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-53	MYB family protein