PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190118.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 345aa    MW: 39376.8 Da    PI: 7.8101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.73.1e-2376157285
        trihelix   2 WtkqevlaLiearremeerlrrg..klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     W++qe+++ i++r e+e+++ ++  +  k+lWe v++km+e g++r+++qCk+kw+nl +ryk  ++++ +    s ++cp+f++l
  XP_019190118.1  76 WSNQETRDFIAIRAELERDFASAkrNTSKALWEVVAAKMKELGYRRTSEQCKCKWKNLVNRYKGKETSDAD----SGRQCPFFEEL 157
                     *********************8612578************************************9999998....4678*****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MMFGRSGGAG NGSGGGSRDS ESLGGGGGPF RHHQTMLPPL PLHLRPTVPI ASTAGGGVAL  60
GGDDEFPRRD ERVPPWSNQE TRDFIAIRAE LERDFASAKR NTSKALWEVV AAKMKELGYR  120
RTSEQCKCKW KNLVNRYKGK ETSDADSGRQ CPFFEELCAV FTARENNMQQ LQLESEVGPQ  180
RGRKRVRSAD QSSEEFSEEE EDNDYESDGD RVTTGSVASK KKAQKEKRAR PTATDNKSSK  240
NPASDRGNRS STLEGIHELL CSFIQQQLRT EMQWRESMEK CSKERELFEQ EWRQTMEKLE  300
KDRIMLEQAW REREEQRRIR EENRAEKRDA LLTMLLNKLV NENQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-33Trihelix family protein