PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190148.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 309aa    MW: 34720.3 Da    PI: 6.8339
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l +++k+ G g+W++ ++  g+ R++k+c++rw +yl
   XP_019190148.1 14 KGPWTPEEDEKLTEYIKKNGHGSWRSLPKFAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+el v+++ +lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_019190148.1  67 RGPFSPEEEELVVQLHGLLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGRAPCCDKK GLKKGPWTPE EDEKLTEYIK KNGHGSWRSL PKFAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SPEEEELVVQ LHGLLGNRWA AIASQLPGRT DNEIKNLWNT HLKKRMISMC  120
IDPQTHKPSS DANGLMWTMP TTPSARHMAQ WESARLEAEA RLSRESLHLV PSPTTVGSET  180
DFFLRMWNSE IGESFRKLKK GEKADCQSPI SETSSSMKCG SASGTTEVDP TLTVHSAADC  240
NLNKDAEQKS CKSYIEYPLS EMSCTDELDD SSESALQLLL DFPTHTDMSF LEHTDAYTIH  300
PTPFSPKIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-119MYB family protein