PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190286.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28114.3 Da    PI: 4.898
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-194294456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++++eq+++Le++Fe++r ++ e++ ++A+++gL+ +qV +WFqNrRa++k
  XP_019190286.1 42 KKRLSAEQVKALEQVFEEDRQLDPERKVKIAQETGLQPKQVAIWFQNRRARHK 94
                    45699**********************************************99 PP
2HD-ZIP_I/II115.82.5e-3741131292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+rls+eqvk+LE+ Fee+++L+perKv++a+e glqp+qva+WFqnrRAR+ktkq+E+dy+ Lk++y+al+ + +++e+e+e L +elk
  XP_019190286.1  41 KKKRLSAEQVKALEQVFEEDRQLDPERKVKIAQETGLQPKQVAIWFQNRRARHKTKQMERDYTLLKANYEALHLNYTKVEQEKEGLIAELK 131
                     9*************************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MKRFTFSDSS TTLLYPHKGE FVGGMLEGLE YEESMEEMNV KKKRLSAEQV KALEQVFEED  60
RQLDPERKVK IAQETGLQPK QVAIWFQNRR ARHKTKQMER DYTLLKANYE ALHLNYTKVE  120
QEKEGLIAEL KGLKQKIGEE NNAGLHHSAK EPITINLGSQ NQEHRTTNYA AAYNTSQLSP  180
DSDDSSGVLN NNEDCSLNIL QLMHKISTVD QRSDFANVED RSGGLGCTED SCNIFCVDEA  240
PDEFYW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14170KKKRLSAEQVKALEQVFEEDRQLDPERKVK
28997RRARHKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.21e-36HD-ZIP family protein