PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190297.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 744aa MW: 84339 Da PI: 7.9881

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.4	1.8e-21	78	162	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019190297.1 78 LYNSYAYRLGFSVRKGHQRYKGSTNTIQMKNFCCSKAGYKANNGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKMHNHELC 162 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MEDGTEQTNS AVGDWHSIQG DLVIVFAFVP LLFFSEGIVD GSVSSDQVDV DVDGSSSVPV 60 DQDLVGLVVS NVDEAFELYN SYAYRLGFSV RKGHQRYKGS TNTIQMKNFC CSKAGYKANN 120 GVKAYSKIDT RTGCGAFVQF DVGDDGLWTV TKHEKMHNHE LCVFNKSHLL RSHRSVGDNQ 180 LLYLQGLKDS GVALADGIRF LKHQSGGSPL VGFTNRDAYN SMATDTVKRL DGTDSNSLIE 240 IFRRRQSTET DFFFDFELDL GARLCWMNHH CMNVMFGCGF LMNEMIESFV WLFKAFLRSM 300 GGKCPQTIMT DQCAVMTAAI SKVFPTSRHR ICIWHIGENS KKHIKTLRNN KDFLDTFNYV 360 LKYTKTEAEF QFYWTRLVTD YKCHKNTWLE KSYDCREKWC LAFNKDYFSG GILSSQRSET 420 TNHSISRRLS KTAGLCDFYS SFVSVISEWR SKENCEDFRC AQGVPVMMME HVKLLSHARE 480 VYTIEIYFLF EEQFMKGNVC HQEMVLNDGR QQKYHVWRPD IDIIRHEVSF NPANLDISCS 540 CKLICELGIL CCHCLRIFHV HCVSSIPDKY ILKRWTKKVI DGRNVNIDSM VYNVCIPPSI 600 WVFDISRKFQ RLVVSSQDSS VARKLCDEAV DDVKKKVEAE IGNVHIEECG VSSSSGGVQN 660 PSSRRLKGER NKRRNGVIEK KYSLARGRRS AANKAALSTK GAVRSLVLEN ISKLAGDGYL 720 VHPSSSSSDF VQFSKGLDDN VGVD

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MEDGTEQTNS AVGDWHSIQG DLVIVFAFVP LLFFSEGIVD GSVSSDQVDV DVDGSSSVPV  60
DQDLVGLVVS NVDEAFELYN SYAYRLGFSV RKGHQRYKGS TNTIQMKNFC CSKAGYKANN  120
GVKAYSKIDT RTGCGAFVQF DVGDDGLWTV TKHEKMHNHE LCVFNKSHLL RSHRSVGDNQ  180
LLYLQGLKDS GVALADGIRF LKHQSGGSPL VGFTNRDAYN SMATDTVKRL DGTDSNSLIE  240
IFRRRQSTET DFFFDFELDL GARLCWMNHH CMNVMFGCGF LMNEMIESFV WLFKAFLRSM  300
GGKCPQTIMT DQCAVMTAAI SKVFPTSRHR ICIWHIGENS KKHIKTLRNN KDFLDTFNYV  360
LKYTKTEAEF QFYWTRLVTD YKCHKNTWLE KSYDCREKWC LAFNKDYFSG GILSSQRSET  420
TNHSISRRLS KTAGLCDFYS SFVSVISEWR SKENCEDFRC AQGVPVMMME HVKLLSHARE  480
VYTIEIYFLF EEQFMKGNVC HQEMVLNDGR QQKYHVWRPD IDIIRHEVSF NPANLDISCS  540
CKLICELGIL CCHCLRIFHV HCVSSIPDKY ILKRWTKKVI DGRNVNIDSM VYNVCIPPSI  600
WVFDISRKFQ RLVVSSQDSS VARKLCDEAV DDVKKKVEAE IGNVHIEECG VSSSSGGVQN  660
PSSRRLKGER NKRRNGVIEK KYSLARGRRS AANKAALSTK GAVRSLVLEN ISKLAGDGYL  720
VHPSSSSSDF VQFSKGLDDN VGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-62	FAR1 family protein