PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190335.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 497aa    MW: 56475.3 Da    PI: 7.711
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.55.9e-2073171190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY++YA+ vGF+vr s+ +++ r+g  +k  +vCs+eg+++  + +           ++ +r+r+++r+gC+a+l++k+ +dg+++v+ +el H
  XP_019190335.1  73 DFYRQYASLVGFDVRCSSLRRN-RQGVAVKDLLVCSREGFKQAVQGSvvvdaaldqvPVDPKRRRVSNRVGCRARLVLKMGDDGVFVVHFIELRH 166
                     6*****************9999.7888999**************999********99899999******************************** PP

            FAR1  86 nHela 90 
                     nH l+
  XP_019190335.1 167 NHCLC 171
                     **998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MDSPDCLLIY GFRWWDDNIA CVFLDLVRSR SESQHGCVMD VSPDGTKFWT PSCDAAVRPF  60
QGQTLPSLAH GIDFYRQYAS LVGFDVRCSS LRRNRQGVAV KDLLVCSREG FKQAVQGSVV  120
VDAALDQVPV DPKRRRVSNR VGCRARLVLK MGDDGVFVVH FIELRHNHCL CSDVAKPFLR  180
GNRSMDVQHQ IFVLKCARAN VGPNRSFRLA REFSGSYSNV GATCVDFKNL KRDLMTFIGT  240
SDAHIVVKKY AKKVDDCPDY VFRYDVDSQD QLCRAFWTDP IAKENFSAFG EVVSFDATYG  300
TNRYGMVLVP FTGVDNHKRG VTFAMGLISR EDVDSYVWLL QQFKSAMGCV PSCTITDQDP  360
SMRVAVPQVF DTTRHRFCMW HIMSKVGEKV GNVLSKDEEF RRALNDVVWC ETSSVEEFER  420
GWQDVMKKYS LGDHRWFRLM YDLRSYWIPA YFNDIFMGGL LRTTSRSEAA NSVFGSCTNQ  480
HASLSELFNN FEGAIDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-68FAR1 family protein