PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190382.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 307aa MW: 34783.8 Da PI: 6.7003

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W++ ++ g++R++k+c++rw +yl XP_019190382.1 14 KGPWTPEEDKKLSDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.8	1.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+ +++++ lG++ W+tIa +++ gRt++++k++w+++l XP_019190382.1 67 RGKISQEEEHTILHLHSILGNK-WSTIATHLP-GRTDNEIKNFWNTHL 112 7999****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MGRAPCCDEN GLKKGPWTPE EDKKLSDYIE KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKI SQEEEHTILH LHSILGNKWS TIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DDLFSNLPNL LALATLLQPH KLEEAQAAAH NIMATKIQYL QMLFQSSPPL 180 PMTTTTSSSS YDNNGDFWDF NLPNLSNKET DNNQTLFSIE NSGTSQLLHN QLVPFNFQTH 240 LNNDNNNKSL NSDSILPPLT DCFLNNNNNK GDSTSTSSNG DYQGTSSSSS YDWPELLLEE 300 AFMHDIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-87	MYB family protein