PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190565.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 242aa MW: 26519.9 Da PI: 9.4101

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.5	2.2e-38	46	146	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rrkC++dC+lap+fpa ++++f nvhklFG++n+++ l+a+++ + +d m s++yeA+ara dPv G++g+i++l+qql+ + +el+ XP_019190565.1 46 ACAVCKHQRRKCPPDCPLAPHFPAYKQRDFLNVHKLFGVRNLTRALAAIDKRKSHDFMVSVIYEANARAADPVGGCLGLIHNLNQQLKYSTVELD 140 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++l XP_019190565.1 141 IVNQQL 146 999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MVNTANNPTN TYPKASVPSP PPPPYTLSFK HTAETHASAA GGGGGACAVC KHQRRKCPPD 60 CPLAPHFPAY KQRDFLNVHK LFGVRNLTRA LAAIDKRKSH DFMVSVIYEA NARAADPVGG 120 CLGLIHNLNQ QLKYSTVELD IVNQQLAFYR SRQMAAAAFD PSSQLGSSSN TPDFVRNDKQ 180 HITDHRFHRF PEKQQFDNGE VSFAGSSVKL SDGIGLIDNS IKAKEEGEED LKNAASKFSL 240 RK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-32	LBD family protein